Cedoljub (Ceda) Bundalovic-Torma, PhD.
Postdoctoral Fellow
BSc, Biochemistry (Honours), McMaster University, 2008
MSc, Computational Engineering and Science, McMaster University, 2010
PhD, Biochemistry, University of Toronto 2018
Publications:
Predictive modeling of Pseudomonas syringae virulence on bean using gradient boosted decision trees.
Almeida, RND, Greenberg, M, Bundalovic-Torma, C, Martel, A, Wang, PW, Middleton, MA, Chatterton, S, Desveaux, D, Guttman, DS.
PLoS Pathog.18,2022. PubMed PMID:35877772
Diversity, Evolution, and Function of Pseudomonas syringae Effectoromes.
Bundalovic-Torma, C, Lonjon, F, Desveaux, D, Guttman, DS.
Annu Rev Phytopathol.60,2022. PubMed PMID:35537470
RecPD: A Recombination-aware measure of phylogenetic diversity.
Bundalovic-Torma, C, Desveaux, D, Guttman, DS.
PLoS Comput Biol.18,2022. PubMed PMID:35192600
Comparative genomic insights into the epidemiology and virulence of plant pathogenic pseudomonads from Turkey.
Dillon, MM, Ruiz-Bedoya, T, Bundalovic-Torma, C, Guttman, KM, Kwak, H, Middleton, MA, Wang, PW, Horuz, S, Aysan, Y, Guttman, DS.
Microb Genom.7,2021. PubMed PMID:34227931
Evolutionary and structural analyses of SARS-CoV-2 D614G spike protein mutation now documented worldwide.
Isabel, S, Graña-Miraglia, L, Gutierrez, JM, Bundalovic-Torma, C, Groves, HE, Isabel, MR, Eshaghi, A, Patel, SN, Gubbay, JB, Poutanen, T, Guttman, DS, Poutanen, SM.
Sci Rep.10,2020. PubMed PMID:32820179
Discovery and characterization of a Gram-positive Pel polysaccharide biosynthetic gene cluster.
Whitfield, GB, Marmont, LS, Bundalovic-Torma, C, Razvi, E, Roach, EJ, Khursigara, CM, Parkinson, J, Howell, PL.
PLoS Pathog.16,2020. PubMed PMID:32236137
A systematic pipeline for classifying bacterial operons reveals the evolutionary landscape of biofilm machineries.
Bundalovic-Torma, C, Whitfield, GB, Marmont, LS, Howell, PL, Parkinson, J.
PLoS Comput Biol.16,2020. PubMed PMID:32236097
Global landscape of cell envelope protein complexes in Escherichia coli.
Babu, M, Bundalovic-Torma, C, Calmettes, C, Phanse, S, Zhang, Q, Jiang, Y, Minic, Z, Kim, S, Mehla, J, Gagarinova, A, Rodionova, I, Kumar, A, Guo, H, Kagan, O, Pogoutse, O, Aoki, H, Deineko, V, Caufield, JH, Holtzapple, E, Zhang, Z, Vastermark, A, Pandya, Y, Lai, CC, El Bakkouri, M, Hooda, Y, Shah, M, Burnside, D, Hooshyar, M, Vlasblom, J, Rajagopala, SV, Golshani, A, Wuchty, S, F Greenblatt, J, Saier, M, Uetz, P, F Moraes, T, Parkinson, J, Emili, A.
Nat Biotechnol.36,2018. PubMed PMID:29176613
Conditional Epistatic Interaction Maps Reveal Global Functional Rewiring of Genome Integrity Pathways in Escherichia coli.
Kumar, A, Beloglazova, N, Bundalovic-Torma, C, Phanse, S, Deineko, V, Gagarinova, A, Musso, G, Vlasblom, J, Lemak, S, Hooshyar, M, Minic, Z, Wagih, O, Mosca, R, Aloy, P, Golshani, A, Parkinson, J, Emili, A, Yakunin, AF, Babu, M.
Cell Rep.14,2016. PubMed PMID:26774489
Comparative Genomics and Evolutionary Modularity of Prokaryotes.
Bundalovic-Torma, C, Parkinson, J.
Adv Exp Med Biol.883,2015. PubMed PMID:26621462
Quantitative genome-wide genetic interaction screens reveal global epistatic relationships of protein complexes in Escherichia coli.
Babu, M, Arnold, R, Bundalovic-Torma, C, Gagarinova, A, Wong, KS, Kumar, A, Stewart, G, Samanfar, B, Aoki, H, Wagih, O, Vlasblom, J, Phanse, S, Lad, K, Yeou Hsiung Yu, A, Graham, C, Jin, K, Brown, E, Golshani, A, Kim, P, Moreno-Hagelsieb, G, Greenblatt, J, Houry, WA, Parkinson, J, Emili, A.
PLoS Genet.10,2014. PubMed PMID:24586182