Anuradha Surendra
Bioinformatician
Publications:
Stimuli-Responsive Biomaterials for Tissue Engineering Applications.
Yadav, D, Sharma, PK, Malviya, R, Mishra, PS, Surendra, AV, Rao, GK, Rani, BR.
Curr Pharm Biotechnol.,2023. PubMed PMID:37594093
CRISPR/Cas-mediated genome editing in mice for the development of drug delivery mechanism.
Sowbhagya, R, Muktha, H, Ramakrishnaiah, TN, Surendra, AS, Tanvi, Y, Nivitha, K, Rajashekara, S.
Mol Biol Rep.50,2023. PubMed PMID:37438488
Differential Expression Feature Extraction (DEFE): A Case Study in Wheat FHB RNA-Seq Data Analysis.
Pan, Y, Surendra, A, Liu, Z, Ouellet, T, Foroud, NA.
Methods Mol Biol.2659,2023. PubMed PMID:37249891
Signed Distance Correlation (SiDCo): an online implementation of distance correlation and partial distance correlation for data-driven network analysis.
Monti, F, Stewart, D, Surendra, A, Alecu, I, Nguyen-Tran, T, Bennett, SAL, Čuperlović-Culf, M.
Bioinformatics.39,2023. PubMed PMID:37137236
Dementia with Lewy bodies post-mortem brains reveal differentially methylated CpG sites with biomarker potential.
Shao, X, Vishweswaraiah, S, Čuperlović-Culf, M, Yilmaz, A, Greenwood, CMT, Surendra, A, McGuinness, B, Passmore, P, Kehoe, PG, Maddens, ME, Bennett, SAL, Green, BD, Radhakrishna, U, Graham, SF.
Commun Biol.5,2022. PubMed PMID:36418427
METAbolomics data Balancing with Over-sampling Algorithms (META-BOA): an online resource for addressing class imbalance.
Hashimoto-Roth, E, Surendra, A, Lavallée-Adam, M, Bennett, SAL, Čuperlović-Culf, M.
Bioinformatics.38,2022. PubMed PMID:36222566
BATL: Bayesian annotations for targeted lipidomics.
Chitpin, JG, Surendra, A, Nguyen, TT, Taylor, GP, Xu, H, Alecu, I, Ortega, R, Tomlinson, JJ, Crawley, AM, McGuinty, M, Schlossmacher, MG, Saunders-Pullman, R, Cuperlovic-Culf, M, Bennett, SAL, Perkins, TJ.
Bioinformatics.38,2022. PubMed PMID:34951624
An insight of nanogels as novel drug delivery system with potential hybrid nanogel applications.
Maddiboyina, B, Desu, PK, Vasam, M, Challa, VT, Surendra, AV, Rao, RS, Alagarsamy, S, Jhawat, V.
J Biomater Sci Polym Ed.33,2022. PubMed PMID:34547214
Metabolomics and computational analysis of the role of monoamine oxidase activity in delirium and SARS-COV-2 infection.
Cuperlovic-Culf, M, Cunningham, EL, Teimoorinia, H, Surendra, A, Pan, X, Bennett, SAL, Jung, M, McGuiness, B, Passmore, AP, Beverland, D, Green, BD.
Sci Rep.11,2021. PubMed PMID:34017039
Identification of transcriptional subtypes in lung adenocarcinoma and squamous cell carcinoma through integrative analysis of microarray and RNA sequencing data.
Fauteux, F, Surendra, A, McComb, S, Pan, Y, Hill, JJ.
Sci Rep.11,2021. PubMed PMID:33888829
Analysis and Simulation of Glioblastoma Cell Lines-Derived Extracellular Vesicles Metabolome.
Čuperlović-Culf, M, Khieu, NH, Surendra, A, Hewitt, M, Charlebois, C, Sandhu, JK.
Metabolites.10,2020. PubMed PMID:32131411
Mycobiome Sequencing and Analysis Applied to Fungal Community Profiling of the Lower Respiratory Tract During Fungal Pathogenesis.
McTaggart, LR, Copeland, JK, Surendra, A, Wang, PW, Husain, S, Coburn, B, Guttman, DS, Kus, JV.
Front Microbiol.10,2019. PubMed PMID:30930884
Integrated transcriptome and hormone profiling highlight the role of multiple phytohormone pathways in wheat resistance against fusarium head blight.
Wang, L, Li, Q, Liu, Z, Surendra, A, Pan, Y, Li, Y, Zaharia, LI, Ouellet, T, Fobert, PR.
PLoS One.13,2018. PubMed PMID:30403737
Effects of Atmospheric CO2 Level on the Metabolic Response of Resistant and Susceptible Wheat to Fusarium graminearum Infection.
Cuperlovic-Culf, M, Vaughan, MM, Vermillion, K, Surendra, A, Teresi, J, McCormick, SP.
Mol Plant Microbe Interact.32,2019. PubMed PMID:30256178
Database of resistance related metabolites in Wheat Fusarium head blight Disease (MWFD).
Surendra, A, Cuperlovic-Culf, M.
Database (Oxford).2017,2017. PubMed PMID:29220474
NKT Cell-Deficient Mice Harbor an Altered Microbiota That Fuels Intestinal Inflammation during Chemically Induced Colitis.
Selvanantham, T, Lin, Q, Guo, CX, Surendra, A, Fieve, S, Escalante, NK, Guttman, DS, Streutker, CJ, Robertson, SJ, Philpott, DJ, Mallevaey, T.
J Immunol.197,2016. PubMed PMID:27799307
Metabolic Reprogramming by Hexosamine Biosynthetic and Golgi N-Glycan Branching Pathways.
Ryczko, MC, Pawling, J, Chen, R, Abdel Rahman, AM, Yau, K, Copeland, JK, Zhang, C, Surendra, A, Guttman, DS, Figeys, D, Dennis, JW.
Sci Rep.6,2016. PubMed PMID:26972830
Global Analysis of the Fungal Microbiome in Cystic Fibrosis Patients Reveals Loss of Function of the Transcriptional Repressor Nrg1 as a Mechanism of Pathogen Adaptation.
Kim, SH, Clark, ST, Surendra, A, Copeland, JK, Wang, PW, Ammar, R, Collins, C, Tullis, DE, Nislow, C, Hwang, DM, Guttman, DS, Cowen, LE.
PLoS Pathog.11,2015. PubMed PMID:26588216
Lung microbiota across age and disease stage in cystic fibrosis.
Coburn, B, Wang, PW, Diaz Caballero, J, Clark, ST, Brahma, V, Donaldson, S, Zhang, Y, Surendra, A, Gong, Y, Elizabeth Tullis, D, Yau, YC, Waters, VJ, Hwang, DM, Guttman, DS.
Sci Rep.5,2015. PubMed PMID:25974282
Regulation of obesity-related insulin resistance with gut anti-inflammatory agents.
Luck, H, Tsai, S, Chung, J, Clemente-Casares, X, Ghazarian, M, Revelo, XS, Lei, H, Luk, CT, Shi, SY, Surendra, A, Copeland, JK, Ahn, J, Prescott, D, Rasmussen, BA, Chng, MH, Engleman, EG, Girardin, SE, Lam, TK, Croitoru, K, Dunn, S, Philpott, DJ, Guttman, DS, Woo, M, Winer, S, Winer, DA.
Cell Metab.21,2015. PubMed PMID:25863246