Shalabh Thakur
Graduate student

Publications:

Computational and Functional Analyses of HER2 Mutations Reveal Allosteric Activation Mechanisms and Altered Pharmacologic Effects.
Ishiyama, N, O'Connor, M, Salomatov, A, Romashko, D, Thakur, S, Mentes, A, Hopkins, JF, Frampton, GM, Albacker, LA, Kohlmann, A, Roberts, C, Buck, E.
Cancer Res.83,2023. PubMed PMID:35503682

Population genomics of Vibrionaceae isolated from an endangered oasis reveals local adaptation after an environmental perturbation.
Vázquez-Rosas-Landa, M, Ponce-Soto, GY, Aguirre-Liguori, JA, Thakur, S, Scheinvar, E, Barrera-Redondo, J, Ibarra-Laclette, E, Guttman, DS, Eguiarte, LE, Souza, V.
BMC Genomics.21,2020. PubMed PMID:32571204

Recombination of ecologically and evolutionarily significant loci maintains genetic cohesion in the Pseudomonas syringae species complex.
Dillon, MM, Thakur, S, Almeida, RND, Wang, PW, Weir, BS, Guttman, DS.
Genome Biol.20,2019. PubMed PMID:30606234

Identification and analysis of seven effector protein families with different adaptive and evolutionary histories in plant-associated members of the Xanthomonadaceae.
Assis, RAB, Polloni, LC, Patané, JSL, Thakur, S, Felestrino, ÉB, Diaz-Caballero, J, Digiampietri, LA, Goulart, LR, Almeida, NF, Nascimento, R, Dandekar, AM, Zaini, PA, Setubal, JC, Guttman, DS, Moreira, LM.
Sci Rep.7,2017. PubMed PMID:29170530

A De-Novo Genome Analysis Pipeline (DeNoGAP) for large-scale comparative prokaryotic genomics studies.
Thakur, S, Guttman, DS.
BMC Bioinformatics.17,2016. PubMed PMID:27363390

Genomic screens identify a new phytobacterial microbe-associated molecular pattern and the cognate Arabidopsis receptor-like kinase that mediates its immune elicitation.
Mott, GA, Thakur, S, Smakowska, E, Wang, PW, Belkhadir, Y, Desveaux, D, Guttman, DS.
Genome Biol.17,2016. PubMed PMID:27160854

Phytopathogen Genome Announcement: Draft Genome Sequences of 62 Pseudomonas syringae Type and Pathotype Strains.
Thakur, S, Weir, BS, Guttman, DS.
Mol Plant Microbe Interact.29,2016. PubMed PMID:26883489

Extensive remodeling of the Pseudomonas syringae pv. avellanae type III secretome associated with two independent host shifts onto hazelnut.
O'Brien, HE, Thakur, S, Gong, Y, Fung, P, Zhang, J, Yuan, L, Wang, PW, Yong, C, Scortichini, M, Guttman, DS.
BMC Microbiol.12,2012. PubMed PMID:22800299

Identification of innate immunity elicitors using molecular signatures of natural selection.
McCann, HC, Nahal, H, Thakur, S, Guttman, DS.
Proc Natl Acad Sci U S A.109,2012. PubMed PMID:22323605

CastorDB: a comprehensive knowledge base for Ricinus communis.
Thakur, S, Jha, S, Chattoo, BB.
BMC Res Notes.4,2011. PubMed PMID:21914200

Evolution of plant pathogenesis in Pseudomonas syringae: a genomics perspective.
O'Brien, HE, Thakur, S, Guttman, DS.
Annu Rev Phytopathol.49,2011. PubMed PMID:21568703

Genomic resources of Magnaporthe oryzae (GROMO): a comprehensive and integrated database on rice blast fungus.
Thakur, S, Jha, S, Roy-Barman, S, Chattoo, B.
BMC Genomics.10,2009. PubMed PMID:19604367