Genome Sequences of Pseudomonas syringae Type and Pathotype Strains |

Source:
Phytopathogen Genome Announcement: Draft Genome Sequences of 62 Pseudomonas syringae Type and Pathotype Strains
Shalabh Thakur, Bevan S. Weir, David S. Guttman
Mol Plant Microbe Interact. 2016 Feb 17
PMID: 26883489

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Species	Pathovar	Pv./Sp. Abbr.	Designation	Type	Accession	Genome Size (bp)	No. of Contigs	N50	Genome Coverage	No. CDS	Phylogroup	Country of Isolation	Host Common Name	Host Scientific Name

Species	Pathovar	Pv./Sp. Abbr.	Designation	Type	Accession	Genome Size (bp)	No. of Contigs	N50	Genome Coverage	No. CDS	Phylogroup	Country of Isolation	Host Common Name	Host Scientific Name
Pseudomonas syringae	aceris	Pac	ICMP 2802	PT	LJPM00000000	6,301,287	684	21,044	18.76	5772	2	United States	maple	Acer sp.
Pseudomonas syringae	aesculi	Pae	ICMP 8947	PT	LJPN00000000	5,831,425	657	18,777	28.82	5701	3	India	horse chestnut	Aesculus indica Colebr.
Pseudomonas syringae	alisalensis	Pal	ICMP 15200	PT	LJPP00000000	6,102,306	400	37,474	54.89	5259	5	United States	broccoli raab	Brassica rapa subsp. rapa
Pseudomonas syringae	antirrhini	Pat	ICMP 4303	PT	LJPT00000000	6,132,316	189	59,555	48.95	5584	1	United Kingdom	snapdragon	Antirrhinum majus
Pseudomonas syringae	apii	Pap	ICMP 2814	PT	LJPR00000000	6,054,618	203	71,825	72.17	5579	1	United States	celery	Apium graveolens var. dulce (Mill.) Pers.
Pseudomonas syringae	aptata	Ptt	ICMP 459	PT	LJRP00000000	5,977,528	149	129,424	39.99	5318	2	United States	sugar beet	Beta vulgaris
Pseudomonas syringae	atrofaciens	Paf	ICMP 4394	PT	LJPO00000000	6,012,445	248	56,132	32.69	5278	2	New Zealand	wheat	Triticum aestivum
Pseudomonas syringae	atropurpurea	Par	ICMP 4457	PT	LJPS00000000	5,793,237	167	97,353	32.36	5154	4	Japan	Italian ryegrass	Lolium multiflorum Lam.
Pseudomonas syringae	berberidis	Pbb	ICMP 4116	PT	LJPU00000000	6,263,633	342	55,290	167.11	5785	1	New Zealand	barberry	Berberis sp.
Pseudomonas syringae	broussonetiae	Pbr	ICMP 13650	PT	LJPV00000000	5,802,206	623	26,393	54.39	5582	3	Japan	paper mulberry	Broussonetia kazinoki Sieb. X Broussonetia papyrifa Vent.
Pseudomonas syringae	castaneae	Pcs	ICMP 9419	PT	LJQD00000000	6,378,468	614	8,895	65.81	6389	3	Japan	Japanese chestnut	Castanea crenata Sieb. & Zucc.
Pseudomonas syringae	cerasicola	Pce	ICMP 17524	PT	LJQA00000000	5,526,840	970	11,460	17.45	5395	3	Japan	cherry	Prunus x yedoensis
Pseudomonas syringae	ciccaronei	Pcc	ICMP 5710	PT	LJPY00000000	5,757,646	496	39,533	87.57	5528	3	Italy	carob	Ceratonia siliqua
Pseudomonas syringae	coriandricola	Pcd	ICMP 12471	PT	LJPZ00000000	5,846,834	426	38,916	49.93	5257	5	Germany	cilantro	Coriandrum sativum
Pseudomonas syringae	coryli	Pcr	ICMP 17001	PT	LJQC00000000	5,966,981	1143	10,167	15.01	5554	2	Italy	European hazelnut	Corylus avellana
Pseudomonas syringae	cunninghamiae	Pcu	ICMP 11894	PT	LJQE00000000	5,782,797	389	35,340	38.75	5463	3	China	Chinese fir	Cunninghamia lanceolata
Pseudomonas syringae	daphniphylli	Pda	ICMP 9757	PT	LJQF00000000	5,933,542	528	29,819	112.73	5550	3	Japan	himeyuzuriha	Daphniphyllum teijsmanni Zoll.
Pseudomonas syringae	delphinii	Pdp	ICMP 529	PT	LJQH00000000	6,144,113	411	27,459	50.72	5386	1	New Zealand	delphinium	Delphinium sp.
Pseudomonas syringae	dendropanacis	Pde	ICMP 9150	PT	LJQG00000000	5,666,913	373	33,960	51.39	5326	3	Japan	kakuremino	Dendropanax trifidus
Pseudomonas syringae	eriobotryae	Per	ICMP 4455	PT	LJQI00000000	6,161,132	440	28,807	49.85	6069	3	United States	loquat	Eriobotrya japonica
Pseudomonas savastanoi	fraxini	Pfr	ICMP 7711	PT	LLJL00000000	6,015,697	481	38,704	67.98	5606	3	Netherlands	European ash	Fraxinus excelsior
Pseudomonas syringae	garcae	Pgc	ICMP 4323	PT	LJQK00000000	5,509,919	109	114,831	39.56	4875	4	Brazil	coffee	Coffea arabica
Pseudomonas savastanoi	glycinea	Pgy	ICMP 2189	PT	LJQL00000000	5,983,696	430	37,582	27.1	5741	3	New Zealand	soybean cv. disoy	Glycine max
Pseudomonas syringae	helianthi	Phe	ICMP 4531	PT	LJQM00000000	6,208,747	277	54,333	41.45	5585	6	Mexico	sunflower	Helianthus annuus
Pseudomonas syringae	hibisci	Phi	ICMP 9623	PT	LJQN00000000	6,111,700	156	99,663	102.65	5608	3	United States	Chinese hibiscus	Hibiscus rosa-sinensis
Pseudomonas syringae	lachrymans	Pla	ICMP 3507	PT	LJQP00000000	6,121,722	512	21,694	34.74	6152	3	Hungary	cucumber	Cucumis sativus
Pseudomonas syringae	lapsa	Plp	ICMP 3947	PT	LJQQ00000000	5,850,559	118	124,931	42.19	5156	2		corn hybrid	Zea sp.
Pseudomonas syringae	maculicola	Pma	ICMP 3935	PT	LJQR00000000	6,064,255	229	72,312	99.1	5588	1	New Zealand	cauliflower	Brassica oleracea var Botrytis
Pseudomonas syringae	mellea	Pme	ICMP 5711	PT	LJQS00000000	5,895,398	260	49,083	20.31	5445	3	Japan	tobacco	Nicotiana tabacum
Pseudomonas syringae	mori	Pmo	ICMP 4331	PT	LJQU00000000	5,818,523	619	20,579	41.5	5837	3	Hungary	white mulberry	Morus alba
Pseudomonas syringae	myricae	Pmy	ICMP 7118	PT	LJQV00000000	5,953,908	403	37,332	50.44	5599	3	Japan	Chinese bayberry	Myrica rubra
Pseudomonas savastanoi	nerii	Pne	ICMP 16943	PT	LJQW00000000	5,715,739	341	38,255	45.19	5394	3	Spain	oleander	Nerium oleander
Pseudomonas syringae	oryzae	Por	ICMP 9088	PT	LJQX00000000	5,502,925	86	172,792	99.77	4825	4	Japan	rice cv. akihikari	Oryza sativa
Pseudomonas syringae	papulans	Ppp	ICMP 4048	PT	LJRB00000000	6,097,618	298	65,788	31.27	5636	2	Canada	apple	Malus X domestica Borkh.
Pseudomonas savastanoi	phaseolicola	Pph	ICMP 2740	PT	LJQZ00000000	5,967,551	287	52,236	32.17	5720	3	Canada	bean	Phaseolus vulgaris
Pseudomonas syringae	philadelphi	Ppd	ICMP 8903	PT	LJQY00000000	6,150,448	479	55,294	153.36	5751	1	United Kingdom	mock orange cv. aureus	Philadelphus coronarius
Pseudomonas syringae	photiniae	Pho	ICMP 7840	PT	LJQO00000000	5,954,075	624	23,771	39.53	5724	3	Japan	Japanese photinia	Photinia glabra
Pseudomonas syringae	porri	Ppo	ICMP 8961	PT	LJRA00000000	5,828,252	320	63,648	33.99	5195	4	France	leek	Allium porrum
Pseudomonas syringae	primulae	Ppr	ICMP 3956	PT	LJRC00000000	5,895,099	310	36,169	70.03	4982	7	United States	polyanthus	Primula sp.
Pseudomonas savastanoi	retacarpa	Pre	ICMP 16945	PT	LJRD00000000	5,673,161	510	27,300	45.29	5412	3	Spain	broom bush	Retama sphaerocarpa
Pseudomonas syringae	rhaphiolepidis	Prh	ICMP 9756	PT	LJRE00000000	5,483,229	446	28,865	70.93	5280	3	Japan	sharinbai	Rhaphiolepis umbellata
Pseudomonas syringae	ribicola	Pri	ICMP 3882	PT	LJRF00000000	5,893,023	219	52,114	80.2	4953	7	United States	golden currant	Ribes aureum
Pseudomonas savastanoi	savastanoi	Psv	ICMP 4352	T / PT	LJRJ00000000	6,023,516	321	55,596	66.92	5728	3	Yugoslavia	olive	Olea europaea
Pseudomonas syringae	sesame	Pse	ICMP 763	PT	LJRG00000000	6,028,879	462	44,661	33.11	5677	3	Yugoslavia	sesame	Sesamum indicum
Pseudomonas syringae	solidagae	Pso	ICMP 16925	PT	LJRH00000000	5,980,624	382	37,149	32.43	5412	2	Japan	tall golden rod	Solidago altissima
Pseudomonas syringae	spinaceae	Psp	ICMP 16929	PT	LJRI00000000	6,039,219	1657	5,991	16.85	6599	1	Japan	spinach	Spinacia oleracea
Pseudomonas syringae	syringae	Psy	ICMP 3023	PT	LJRK00000000	6,073,368	179	76,745	72.61	5350	2	United Kingdom	lilac	Syringa vulgaris
Pseudomonas syringae	tabaci	Pta	ICMP 2835	PT	LJRL00000000	6,239,582	170	106,290	92.91	5707	3	Hungary	tobacco	Nicotiana tabacum
Pseudomonas syringae	tagetis	Ptg	ICMP 4091	PT	LJRM00000000	6,042,642	208	69,652	55.37	5383	6	Zimbabwe	African marigold	Tagetes erecta
Pseudomonas syringae	theae	Pth	ICMP 3923	PT	LJRU00000000	6,233,091	369	38,965	96.66	5423	1	Japan	tea	Camellia sinensis
Pseudomonas syringae	tomato	Pto	ICMP 2844	PT	LJRN00000000	6,261,696	344	45,004	62.33	5626	1	United Kingdom	tomato	Lycopersicon esculentum
Pseudomonas tremae	tremae	Ptr	ICMP 9151	T / PT	LJRO00000000	5,930,024	510	133,195	76.53	5545	4	Japan	urajiroenoki	Trema orientalis Blume
Pseudomonas syringae	ulmi	Pum	ICMP 3962	PT	LJRQ00000000	6,244,367	455	40,538	73.41	5839	3	Yugoslavia	elm	Ulmus sp.
Pseudomonas syringae	viburni	Pvi	ICMP 3963	PT	LJRR00000000	6,405,699	469	35,691	59.32	5866	1	United States	viburnum	Viburnum sp.
Pseudomonas syringae	zizaniae	Pzi	ICMP 8921	PT	LJRT00000000	5,729,547	152	257,833	278.06	5146	4	United States	wild rice	Zizania aquatica
Pseudomonas amygdali		Pam	ICMP 3918	T	LJPQ00000000	5,934,986	222	54,621	50.99	5398	3	Greece	almond	Prunus dulcis
Pseudomonas cannabina	cannabina	Pcb	ICMP 2823	T / PT	LJPX00000000	5,916,843	702	26,269	62.72	5463	5	Hungary	Indian hemp	Cannabis sativa
Pseudomonas caricapapayae		Pca	ICMP 2855	T	LJPW00000000	6,257,942	193	78,662	76.76	5638	6	Brazil	pawpaw, papaya	Carica papaya
Pseudomonas congelans 2		Pco	ICMP 19117	T	LJQB00000000	5,630,811	86	121,405	91.26	4906	2	Germany	grass phyllosphere	NA
Pseudomonas ficuserectae		Pfi	ICMP 7848	T	LJQJ00000000	5,655,233	624	17,896	19.02	5400	3	Japan	Inubiwa	Ficus erecta
Pseudomonas meliae		Pml	ICMP 6289	T	LJQT00000000	5,098,132	504	25,414	34.26	5155	3	Japan	chinaberry	Melia azedarach
Pseudomonas viridiflava		Pvr	ICMP 2848	T	LJRS00000000	5,902,365	254	45,282	66.78	4986	7	Switzerland	bean	Phaseolus vulgaris

Showing 1 to 62 of 62 entries

1 Type strains that have been previously sequenced: P. syringae pv. avellanae ICMP 9746 (ATDK00000000), P. syringae pv. actinidiae ICMP 9617 (AFTH01000000), P. syringae pv. coronafaciens ICMP 3113 (JSED01000000); Type strains that have not been sequenced: P. syringae pv. avii ICMP14479, P. syringae pv. persicae ICMP5846, P. syringae pv. striafaciens ICMP3961, P. syringae pv. morsprunorum ICMP18416, P. syringae pv. pisi ICMP2452, P. syringae pv. passiflorae ICMP 129

2 This strain is not a confirmed plant pathogen