Julia Copeland
Sequencing Technician / Bioinformatics
Microbiome Specialist
Publications:
Habitats Within the Plant Root Differ in Bacterial Network Topology and Taxonomic Assortativity.
Fitzpatrick, CR, Copeland, J, Wang, PW, Guttman, DS, Kotanen, PM, Johnson, MTJ.
Mol Plant Microbe Interact.36,2023. PubMed PMID:36463399
Human milk nutrient fortifiers alter the developing gastrointestinal microbiota of very-low-birth-weight infants.
Asbury, MR, Shama, S, Sa, JY, Bando, N, Butcher, J, Comelli, EM, Copeland, JK, Forte, V, Kiss, A, Sherman, PM, Stintzi, A, Taibi, A, Tomlinson, C, Unger, S, Wang, PW, O'Connor, DL, OptiMoM Feeding Group.
Cell Host Microbe.30,2022. PubMed PMID:35987195
Systematic profiling of the chicken gut microbiome reveals dietary supplementation with antibiotics alters expression of multiple microbial pathways with minimal impact on community structure.
Zou, A, Nadeau, K, Xiong, X, Wang, PW, Copeland, JK, Lee, JY, Pierre, JS, Ty, M, Taj, B, Brumell, JH, Guttman, DS, Sharif, S, Korver, D, Parkinson, J.
Microbiome.10,2022. PubMed PMID:35965349
Invariant natural killer T cells minimally influence gut microbiota composition in mice.
Lin, Q, Kuypers, M, Liu, Z, Copeland, JK, Chan, D, Robertson, SJ, Kontogiannis, J, Guttman, DS, Banks, EK, Philpott, DJ, Mallevaey, T.
Gut Microbes.14,2022. PubMed PMID:35912530
Characterization and predictive functional profiles on metagenomic 16S rRNA data of liver transplant recipients: A longitudinal study.
Sivaraj, S, Copeland, JK, Malik, A, Pasini, E, Angeli, M, Azhie, A, Husain, S, Kumar, D, Allard, J, Guttman, DS, Humar, A, Bhat, M.
Clin Transplant.36,2022. PubMed PMID:34781411
Oligosaccharides and Microbiota in Human Milk Are Interrelated at 3 Months Postpartum in a Cohort of Women with a High Prevalence of Gestational Impaired Glucose Tolerance.
LeMay-Nedjelski, L, Yonemitsu, C, Asbury, MR, Butcher, J, Ley, SH, Hanley, AJ, Kiss, A, Unger, S, Copeland, JK, Wang, PW, Stintzi, A, Bode, L, O'Connor, DL.
J Nutr.151,2021. PubMed PMID:34510198
The Impact of Migration on the Gut Metagenome of South Asian Canadians.
Copeland, JK, Chao, G, Vanderhout, S, Acton, E, Wang, PW, Benchimol, EI, El Sohami, A, Croitoru, K, Gommerman, JL, Guttman, DS, GEMINI Research Team.
Gut Microbes.13,2021. PubMed PMID:33794735
Assessment of Inter-Laboratory Variation in the Characterization and Analysis of the Mucosal Microbiota in Crohn's Disease and Ulcerative Colitis.
Szamosi, JC, Forbes, JD, Copeland, JK, Knox, NC, Shekarriz, S, Rossi, L, Graham, M, Bonner, C, Guttman, DS, Van Domselaar, G, Surette, MG, Bernstein, CN.
Front Microbiol.11,2020. PubMed PMID:32973734
Mothers of Preterm Infants Have Individualized Breast Milk Microbiota that Changes Temporally Based on Maternal Characteristics.
Asbury, MR, Butcher, J, Copeland, JK, Unger, S, Bando, N, Comelli, EM, Forte, V, Kiss, A, LeMay-Nedjelski, L, Sherman, PM, Stintzi, A, Tomlinson, C, Wang, PW, O'Connor, DL.
Cell Host Microbe.28,2020. PubMed PMID:32888417
Maternal Diet and Infant Feeding Practices Are Associated with Variation in the Human Milk Microbiota at 3 Months Postpartum in a Cohort of Women with High Rates of Gestational Glucose Intolerance.
LeMay-Nedjelski, L, Asbury, MR, Butcher, J, Ley, SH, Hanley, AJ, Kiss, A, Unger, S, Copeland, JK, Wang, PW, Stintzi, A, O'Connor, DL.
J Nutr.151,2021. PubMed PMID:32886107
Examining the relationship between maternal body size, gestational glucose tolerance status, mode of delivery and ethnicity on human milk microbiota at three months post-partum.
LeMay-Nedjelski, L, Butcher, J, Ley, SH, Asbury, MR, Hanley, AJ, Kiss, A, Unger, S, Copeland, JK, Wang, PW, Zinman, B, Stintzi, A, O'Connor, DL.
BMC Microbiol.20,2020. PubMed PMID:32689933
A practical assessment of nano-phosphate on soybean (Glycine max) growth and microbiome establishment.
McKnight, MM, Qu, Z, Copeland, JK, Guttman, DS, Walker, VK.
Sci Rep.10,2020. PubMed PMID:32499485
Limiting oxidative DNA damage reduces microbe-induced colitis-associated colorectal cancer.
Irrazabal, T, Thakur, BK, Kang, M, Malaise, Y, Streutker, C, Wong, EOY, Copeland, J, Gryfe, R, Guttman, DS, Navarre, WW, Martin, A.
Nat Commun.11,2020. PubMed PMID:32286276
Gut-associated IgA+ immune cells regulate obesity-related insulin resistance.
Luck, H, Khan, S, Kim, JH, Copeland, JK, Revelo, XS, Tsai, S, Chakraborty, M, Cheng, K, Tao Chan, Y, Nøhr, MK, Clemente-Casares, X, Perry, MC, Ghazarian, M, Lei, H, Lin, YH, Coburn, B, Okrainec, A, Jackson, T, Poutanen, S, Gaisano, H, Allard, JP, Guttman, DS, Conner, ME, Winer, S, Winer, DA.
Nat Commun.10,2019. PubMed PMID:31409776
Mycobiome Sequencing and Analysis Applied to Fungal Community Profiling of the Lower Respiratory Tract During Fungal Pathogenesis.
McTaggart, LR, Copeland, JK, Surendra, A, Wang, PW, Husain, S, Coburn, B, Guttman, DS, Kus, JV.
Front Microbiol.10,2019. PubMed PMID:30930884
Methods and Strategies to Examine the Human Breastmilk Microbiome.
LeMay-Nedjelski, L, Copeland, J, Wang, PW, Butcher, J, Unger, S, Stintzi, A, O'Connor, DL.
Methods Mol Biol.1849,2018. PubMed PMID:30298248
Chloroplast sequence variation and the efficacy of peptide nucleic acids for blocking host amplification in plant microbiome studies.
Fitzpatrick, CR, Lu-Irving, P, Copeland, J, Guttman, DS, Wang, PW, Baltrus, DA, Dlugosch, KM, Johnson, MTJ.
Microbiome.6,2018. PubMed PMID:30121081
Assembly and ecological function of the root microbiome across angiosperm plant species.
Fitzpatrick, CR, Copeland, J, Wang, PW, Guttman, DS, Kotanen, PM, Johnson, MTJ.
Proc Natl Acad Sci U S A.115,2018. PubMed PMID:29358405
Metabolic Reprogramming by Hexosamine Biosynthetic and Golgi N-Glycan Branching Pathways.
Ryczko, MC, Pawling, J, Chen, R, Abdel Rahman, AM, Yau, K, Copeland, JK, Zhang, C, Surendra, A, Guttman, DS, Figeys, D, Dennis, JW.
Sci Rep.6,2016. PubMed PMID:26972830
Global Analysis of the Fungal Microbiome in Cystic Fibrosis Patients Reveals Loss of Function of the Transcriptional Repressor Nrg1 as a Mechanism of Pathogen Adaptation.
Kim, SH, Clark, ST, Surendra, A, Copeland, JK, Wang, PW, Ammar, R, Collins, C, Tullis, DE, Nislow, C, Hwang, DM, Guttman, DS, Cowen, LE.
PLoS Pathog.11,2015. PubMed PMID:26588216