Day: October 16, 2015

  • Shalabh Thakur

    Shalabh Thakur
    Graduate student







    Publications:

    [pmid-refs key=thakur wrap=p]

  • Amy Zhang

    Amy Zhang
    Graduate student

    B.Sc. University of British Columbia

    Lab: ESC 4039
    Email: amyxw.zhang@mail.utoronto.ca

  • Sylva Donaldson

    Sylva Donaldson, PhD.
    Project Manager

    B.Sc.Hon Queen’s University, Molecular Biology
    M.Sc. University of New Brunswick, Marine Biology
    Ph.D. University of Toronto, Botany

    Email: sylva.donaldson@utoronto.ca



    Publications:

    Detection of Covid-19 Outbreaks Using Built Environment Testing for SARS-CoV-2.
    Fralick, M, Nott, C, Moggridge, J, Castellani, L, Raudanskis, A, Guttman, DS, Hinz, A, Thampi, N, Wong, A, Manuel, D, McGeer, A, Doukhanine, E, Mejbel, H, Zanichelli, V, Burella, M, Donaldson, SL, Wang, PW, Kassen, R, MacFadden, DR.
    NEJM Evid.2,2023. PubMed PMID:38320044

    Microbiome networks and change-point analysis reveal key community changes associated with cystic fibrosis pulmonary exacerbations.
    Layeghifard, M, Li, H, Wang, PW, Donaldson, SL, Coburn, B, Clark, ST, Caballero, JD, Zhang, Y, Tullis, DE, Yau, YCW, Waters, V, Hwang, DM, Guttman, DS.
    NPJ Biofilms Microbiomes.5,2019. PubMed PMID:30675371

    Penicillin-binding protein 3 is a common adaptive target among Pseudomonas aeruginosa isolates from adult cystic fibrosis patients treated with β-lactams.
    Clark, ST, Sinha, U, Zhang, Y, Wang, PW, Donaldson, SL, Coburn, B, Waters, VJ, Yau, YCW, Tullis, DE, Guttman, DS, Hwang, DM.
    Int J Antimicrob Agents.53,2019. PubMed PMID:30664925

    A genome-wide association analysis reveals a potential role for recombination in the evolution of antimicrobial resistance in Burkholderia multivorans.
    Diaz Caballero, J, Clark, ST, Wang, PW, Donaldson, SL, Coburn, B, Tullis, DE, Yau, YCW, Waters, VJ, Hwang, DM, Guttman, DS.
    PLoS Pathog.14,2018. PubMed PMID:30532201

    Selective Sweeps and Parallel Pathoadaptation Drive Pseudomonas aeruginosa Evolution in the Cystic Fibrosis Lung.
    Diaz Caballero, J, Clark, ST, Coburn, B, Zhang, Y, Wang, PW, Donaldson, SL, Tullis, DE, Yau, YC, Waters, VJ, Hwang, DM, Guttman, DS.
    mBio.6,2015. PubMed PMID:26330513

    Phenotypic diversity within a Pseudomonas aeruginosa population infecting an adult with cystic fibrosis.
    Clark, ST, Diaz Caballero, J, Cheang, M, Coburn, B, Wang, PW, Donaldson, SL, Zhang, Y, Liu, M, Keshavjee, S, Yau, YC, Waters, VJ, Elizabeth Tullis, D, Guttman, DS, Hwang, DM.
    Sci Rep.5,2015. PubMed PMID:26047320

    Lung microbiota across age and disease stage in cystic fibrosis.
    Coburn, B, Wang, PW, Diaz Caballero, J, Clark, ST, Brahma, V, Donaldson, S, Zhang, Y, Surendra, A, Gong, Y, Elizabeth Tullis, D, Yau, YC, Waters, VJ, Hwang, DM, Guttman, DS.
    Sci Rep.5,2015. PubMed PMID:25974282

    Analysis of the cystic fibrosis lung microbiota via serial Illumina sequencing of bacterial 16S rRNA hypervariable regions.
    Maughan, H, Wang, PW, Diaz Caballero, J, Fung, P, Gong, Y, Donaldson, SL, Yuan, L, Keshavjee, S, Zhang, Y, Yau, YC, Waters, VJ, Tullis, DE, Hwang, DM, Guttman, DS.
    PLoS One.7,2012. PubMed PMID:23056217

    The BioPAX community standard for pathway data sharing.
    Demir, E, Cary, MP, Paley, S, Fukuda, K, Lemer, C, Vastrik, I, Wu, G, D’Eustachio, P, Schaefer, C, Luciano, J, Schacherer, F, Martinez-Flores, I, Hu, Z, Jimenez-Jacinto, V, Joshi-Tope, G, Kandasamy, K, Lopez-Fuentes, AC, Mi, H, Pichler, E, Rodchenkov, I, Splendiani, A, Tkachev, S, Zucker, J, Gopinath, G, Rajasimha, H, Ramakrishnan, R, Shah, I, Syed, M, Anwar, N, Babur, O, Blinov, M, Brauner, E, Corwin, D, Donaldson, S, Gibbons, F, Goldberg, R, Hornbeck, P, Luna, A, Murray-Rust, P, Neumann, E, Ruebenacker, O, Samwald, M, van Iersel, M, Wimalaratne, S, Allen, K, Braun, B, Whirl-Carrillo, M, Cheung, KH, Dahlquist, K, Finney, A, Gillespie, M, Glass, E, Gong, L, Haw, R, Honig, M, Hubaut, O, Kane, D, Krupa, S, Kutmon, M, Leonard, J, Marks, D, Merberg, D, Petri, V, Pico, A, Ravenscroft, D, Ren, L, Shah, N, Sunshine, M, Tang, R, Whaley, R, Letovksy, S, Buetow, KH, Rzhetsky, A, Schachter, V, Sobral, BS, Dogrusoz, U, McWeeney, S, Aladjem, M, Birney, E, Collado-Vides, J, Goto, S, Hucka, M, Le Novère, N, Maltsev, N, Pandey, A, Thomas, P, Wingender, E, Karp, PD, Sander, C, Bader, GD.
    Nat Biotechnol.28,2010. PubMed PMID:20829833

    Cytoscape Web: an interactive web-based network browser.
    Lopes, CT, Franz, M, Kazi, F, Donaldson, SL, Morris, Q, Bader, GD.
    Bioinformatics.26,2010. PubMed PMID:20656902

    The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function.
    Warde-Farley, D, Donaldson, SL, Comes, O, Zuberi, K, Badrawi, R, Chao, P, Franz, M, Grouios, C, Kazi, F, Lopes, CT, Maitland, A, Mostafavi, S, Montojo, J, Shao, Q, Wright, G, Bader, GD, Morris, Q.
    Nucleic Acids Res.38,2010. PubMed PMID:20576703

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  • Maggie Wolven (Middleton)

    Maggie Wolven (Middleton)
    Lab technician

    B.Sc.Hon. University of Toronto, Biology

    Office: 4037
    Lab: ESC 4039
    Email: maggie.middleton@utoronto.ca







    Publications:

    [pmid-refs key=middletonma wrap=p]

  • Anu Surendra

    Anuradha Surendra
    Bioinformatician
















    Publications:
    [pmid-refs key=surendraa wrap=p]

  • André Severino

    André Santos Severino
    Lab technician

    Office: 4037
    Lab: ESC 4039
    Email: andre.santos.severino@utoronto.ca






    Publications:

    Incipient stem cell niche conversion in tissue culture: using a systems approach to probe early events in WUSCHEL-dependent conversion of lateral root primordia into shoot meristems.
    Chatfield, SP, Capron, R, Severino, A, Penttila, PA, Alfred, S, Nahal, H, Provart, NJ.
    Plant J.73,2013. PubMed PMID:23181633

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